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BIF Centre,
Department of Biochemistry & Biophysics,
University of Kalyani, Kalyani,
Nadia-741 235,
West Bengal India.
Recent Publications
## The detailed publication list is available in the 'People' page. Please visit for detailed publication list.

DR. ANGSHUMAN BAGCHI:
Assistance Professor of Dept. of Biochemistry & Biophysics.
Coordinator, BIF - Centre, University of Kalyani.

2016:
1 A comparative analysis of the 'other roles' of transcriptional factors from pathogenic organisms Angshuman Bagchi Gene (I.F: 2.319), Vol. 586,
Pg. no. 274-280, ISSN: 0378-1119 Difference in DNA-binding abilities of Fur-homolog DNA binding protein from Neisseria gonorrhoeae Angshuman
Bagchi Microbial Pathogenesis (I.F: 1.888), Vol. 99, Pg. no. 62-67, ISSN: 0882-4010
2 Molecular insight into the activity of LasR protein from Pseudomonas aeruginosa in the regulation of virulence gene expression by this organism
Nilkanta Chowdhury and Angshuman Bagchi (Corresponding author) Gene (I.F: 2.319), Vol. 580, Pg. no. 80-87, ISSN: 0378-1119
3 Comparative Analyses of the Relative Effects of Various Mutations in Major Histocompatibility Complex I-a Way to Predict Protein-Protein
Interactions Ananya Ali, Ria Biswas, Sanchari Bhattacharjee, Prabahan Nath, Sumanjit Pan and Angshuman Bagchi (Corresponding author)
Applied Biochemistry and Biotechnology (I.F: 1.687), Vol. 180, Pg. no. 152-164, ISSN: 0273-2289 (print version), ISSN: 1559-0291 (electronic
version)
4 Insight into the biomolecular mechanism of the onset of muscular dystrophy using molecular dynamics and computational mutagenesis studies
Simanti Bhattachrya, Amit Das and Angshuman Bagchi (Corresponding author) Comput. Biol Chem. (I.F: 1.441), Vol. 64, Pg. no. 313-321,
ISSN: 1476-9271
5 Identification of a novel complex between the nucleoprotein and PA(1-27) of influenza virus polymerase Jasmina Vidic, Magali Noiray, Angshuman
Bagchi and Anny SLAMA-SCHWOK Biochemistry (I.F: 2.876), Vol. 55, Pg. no. 4259-4262,  ISSN: 0006-2960 (print version), ISSN: 1520-4995
(electronic version)
6 Insight into the Conformational Variations in SoxYZ Protein Complex from Two Different Members of the beta-Proteobacterial Family Involved in
Sulfur Oxidation Sujay Ray and Angshuman Bagchi (Corresponding author) Interdisciplinary Sciences: Computational Life Sciences (I.F: 0.672)
(in press) ISSN: 1913-2751 (print version), ISSN: 1867-1462 (electronic version)
7 Insights from the docked DoxDA Model with Thiosulphate Sujay Ray and Angshuman Bagchi (Corresponding author) Bioinformation (I.F: 1), 
Vol. 12, Pg. no. 69-73, ISSN: 0973-2063
8 NFkB pathway and inhibition: An overview Ria Biswas and Angshuman Bagchi (Corresponding author) Computational Molecular Biology, doi:
10.5376/cmb.2016.06.0001, ISSN: 1927-5587
9 Insights from the Molecular Dynamics Simulation of Cellobiohydrolase Cel6A Molecular Structural Model from Aspergillus fumigatus NITDGPKA3.
Dodda SR, Sarkar N, Aikat K, Krishnaraj NR, Bhattacharjee S, Bagchi A, Mukhopadhyay SS. Comb Chem High Throughput Screen (I.F: 1.517),
Vol.19; Pg. no. 325-333, ISSN: 1386-2073 (electronic version), ISSN: 1875-5402 (print version)
Book Chapter:
1 Introduction to Molecular Computation: Theory and Applications - DNA and Membrane Computing Angshuman Bagchi Handbook of Research on
Natural Computing for Optimization Problems [Invited Article] ISBN13: 9781522500582; ISBN10: 1522500588; EISBN13: 9781522500599
2 Cellular Automata - Basics, Applications in Problem Solving Simanti Bhattacharya and Angshuman Bagchi (Corresponding author) Handbook of
Research on Natural Computing for Optimization Problems [Invited Article] ISBN13: 9781522500582; ISBN10: 1522500588; EISBN13: 9781522500599
3 Altered PPI Due to Mutations in hPER2 and CKI Delta Locus, Causing ASPS Ananya Ali and Angshuman Bagchi (Corresponding author)
Advances in Intelligent Systems and Computing, Volume: 458, DOI: 10.1007/978-981- 10-2035- 3_1, by Springer; ISBN: 978-981- 10-2035- 3
4 Overview of Cellular Computing-Basic Principles and Applications Amit Das, Rakhi Dasgupta and Angshuman Bagchi (Corresponding author)
Handbook of Research on Natural Computing for Optimization Problems [Invited Article] ISBN13: 9781522500582; ISBN10: 1522500588; EISBN13:
9781522500599

RAJABRATA BHUYAN:

1 Bhuyan, R., & Seal, A. (2016). Dynamics and modulation studies of human voltage gated Kv1. 5 channel. Journal of Biomolecular Structure and
Dynamics, 1-19..
2 Bhuyan, R., & Seal, A. (2015). Molecular dynamics of Kv1. 3 ion channel and structural basis of its inhibition by scorpion toxin-OSK1
derivatives.Biophysical chemistry, 203, 1-11.
3 Saba, N., Bhuyan, R., Kumar Nandy, S., & Seal, A. (2015). Differential Interactions of Cytochrome P450 3A5 and 3A4 with Chemotherapeutic
Agent-Vincristine: A Comparative Molecular Dynamics Study. Anti-Cancer Agents in Medicinal Chemistry (Formerly Current Medicinal Chemistry-Anti-
Cancer Agents), 15(4), 475-483.
4 Bhuyan, R., & Seal, A. (2015). Conformational Dynamics of Shaker-Type Kv1. 1 Ion Channel in Open, Closed, and Two Mutated States. The
Journal of membrane biology, 248(2), 241-255.
5 Bhuyan, R., Nandy, S. K., & Seal, A. (2015). An in silico structural insights into Plasmodium LytB protein and its inhibition. Journal of Biomolecular
Structure and Dynamics, 33(6),1198-1210.


NIKHAT SABA:

1.Saba, N., Bhuyan, R., Kumar Nandy, S., & Seal, A. (2015). Differential Interactions of Cytochrome P450 3A5 and 3A4 with Chemotherapeutic
Agent-Vincristine: A Comparative Molecular Dynamics Study. Anti-Cancer Agents in Medicinal Chemistry (Formerly Current Medicinal Chemistry-
Anti-Cancer Agents), 15(4), 475-483.

SANCHARI BHATTACHARJEE:

1.Bhattacharjee S, Bagchi A and Dasgupta R; Structural Bioinformatic Approach to Understand the Molecular Mechanism of the Interactions of
small heat shock proteins IbpA and IbpB with Lon Protease published in the book Advances in Intelligent System and Computing. Proceedings of
Second International Conference INDIA 2015, Volume 2, Series: Advances in Intelligent Systems and Computing, Vol. 340. Mandal, J.K., Satapathy,
S.C., Kumar Sanyal, M., Sarkar, P.P., Mukhopadhyay, A. (Eds.) ISBN 978-81-322-2247-7.

2.Bhattacharjee S, Dasgupta R, Bagchi A; Structural insights into IbpA-IbpB interactions to Predict their roles in heat shock response;
Computational Intelligence in Medical Informatics (2015) Springer Briefs in Applied Sciences and Technology; Forensic and Medical Bioinformatics
,Series editors: Amit Kumar, Hyderabad, India and Allam Appa Rao, Hyderabad, India. Naresh Babu Muppalaneni and Vinit Kumar Gunjan Editors of
Computational Intelligence in Medical Informatics ISSN 2191-530X ISSN 2191-5318 (electronic) ISBN 978-981-287-259-3 ,ISBN 978-981-287-260-9
(eBook) DOI 10.1007/978-981-287-260-9. Pp 41-51.

3.Bhattacharya S, Bhattacharjee S, Biswas P K, Das A, Bagchi A ;LCMV Interaction Changes with T192M Mutation in Alpha-Dystroglycan;
Computational Intelligence in Medical Informatics (2015), Springer Briefs in Applied Sciences and Technology; Forensic and Medical Bioinformatics,
Series editors: Amit Kumar, Hyderabad, India and Allam Appa Rao, Hyderabad, India. Naresh Babu Muppalaneni and Vinit Kumar Gunjan. Editors of
Computational Intelligence in Medical Informatics ISSN 2191-530X ISSN 2191-5318 (electronic) ISBN 978-981-287-259-3 ,ISBN 978-981-287-260-9
(eBook) DOI 10.1007/978-981-287-260-9. Pp11-23.

4.Ali A, Bhattacharjee S and Bagchi A; Structural Analyses of the Mode of Binding between AANAT protein with 14-3-3 protein involved in Human
melatonin synthesis, published in the book Advances in Intelligent System and Computing. Proceedings of Second International Conference INDIA
2015, Volume 2, Series: Advances in Intelligent Systems and Computing, Vol. 340. Mandal, J.K., Satapathy, S.C., Kumar Sanyal, M., Sarkar,P.P.,
Mukhopadhyay, A. (Eds.) ISBN 978-81-322-2247-7.

5.Das A, Bhattacharya S, Bhattacharjee S, Dasgupta R, Bagchi A; Computational analyses of the length and compositional variations of the FNBP4
gene across 10 different species: Gene (2015); 10.1016/j.gene.2015.09.087.

6.Bhattacharjee S, Dasgupta R and Bagchi A; The Small Heat-Shock Proteins IbpA and IbpB in E. coli: the Small ones with a Big Role. Current
Chemical Biology,(2015) Vol. 9, pp 1-13, ISSN: 1872-3136, DOI: 10.2174/2212796809666151022202506.
7. Ali A, Biswas R, Bhattacharjee S, Nath P, Pan S, Bagchi A.; Comparative Analyses of the Relative Effects of Various Mutations in Major
Histocompatibility Complex I-a Way to Predict Protein-Protein Interactions.Appl Biochem Biotechnol. 2016.
8. Dodda SR, Sarkar N, Aikat K, Krishnaraj NR, Bhattacharjee S, Bagchi A, Mukhopadhyay SS; Insights from the Molecular Dynamics Simulation of
Cellobiohydrolase Cel6A Molecular Structural Model from Aspergillus fumigatus NITDGPKA3. Comb Chem High Throughput Screen. 2016;19(4):325-
33.

RIA BISWAS:

1.Biswas R & Bagchi A; NFkB pathway and inhibition: an overview; Computational Molecular Biology, (2016); vol 6(1), pp 1-20, DOI: 
10.5376/cmb.2016.06.0001 

2. Ali A, Biswas R, Bhattacharjee S, Nath P, Pan S & Bagchi A; Comparative Analyses of the Relative Effects of Various Mutations in Major 
Histocompatibility Complex I-a Way to Predict Protein-Protein Interaction; Applied Biochemistry and Biotechnology, (2016) ; vol 180(1), pp
152-64.  DOI: 10.1007/s12010-016-2090-z.


ANANYA ALI: 

1.Ali A, Bhattacharjee S and Bagchi A; Structural Analyses of the Mode of Binding between AANAT protein with 14-3-3 protein involved in
Human  melatonin synthesis, published in the book Advances in Intelligent System and Computing. Proceedings of Second International
Conference INDIA  2015, Volume 2, Series: Advances in Intelligent Systems and Computing, Vol. 340. Mandal, J.K., Satapathy, S.C., Kumar
Sanyal, M., Sarkar,P.P.,  Mukhopadhyay, A. (Eds.) ISBN 978-81-322-2247-7.

2.Ali A & Bagchi A; Protein-Protein Interactions-Classification, Characterization and Prediction; Current Chemical Biology, Bentham Science
(2015);  vol 9, pp 1-13, ISSN: 1872-3136.    DOI: 10.2174/2212796809666151022202016

3.Ali A, Biswas R, Bhattacharjee S, Nath P, Pan S & Bagchi A; Comparative Analyses of the Relative Effects of Various Mutations in Major 
Histocompatibility Complex I-a Way to Predict Protein-Protein Interactions; Applied Biochemistry and Biotechnology 
<http://link.springer.com/journal/12010>, September 2016, Volume 180, Issue 1 <http://link.springer.com/journal/12010/180/1/page/1>,
pp 152-164. ISSN: 1559-0291 (electronic version), DOI: 10.1007/s12010-016-2090-z 

4.Ali A & Bagchi A; Altered PPI due to mutations in hPER2 and CKI delta locus, causing ASPS. (book chapter accepted on 22.12.2015 and
about to  come online) 

5.Ali A, Biswas R & Bagchi A; Computational analyses of the structural aspects of hAMPD3 protein and its ligand binding interactions leading
to  AMPDDE; Molecular Biotechnology, ISSN: 1559-0305 (electronic version). (communicated)


NILKANTA CHOWDHURY:

1.Chowdhury N & Bagchi A; An Overview of DNA-Protein Interactions; Current Chemical Biology, Bentham Science (2015); vol 9, pp 1-11,
ISSN:  1872-3136.    DOI: 10.2174/2212796809666151022202255.

2.Chowdhury N & Bagchi A; Molecular insight into the activity of LasR protein from Pseudomonas aeruginosa in the regulation of virulence
gene  expression by this organism; Gene (I.F: 2.319), Vol. 580, Pg. no. 80-87, ISSN: 0378-1119.


SEMANTI GHOSH:

2015:

1. Comparative analysis of the mechanisms of sulfur anion oxidation and reduction by dsr operon, Semanti Ghosh and Angshuman 
Bagchi. Computational Biology and Chemistry 59 (2015) 177-184.http://dx.doi.org/10.1016/j.compbiolchem.2015.07.001.

Book Chapter:

Intermolecular Interaction Study Of Dissimilatory Sulfite Reductase (DsrAB) from Sulfur Oxidizing Proteobacteria Allochromatium 
vinosum Semanti Ghosh and Angshuman Bagchi
Information Systems Design and Intelligent Applications
Proceedings of Second International Conference INDIA 2015, Volume 2
Series: Advances in Intelligent Systems and Computing, Vol. 340
Mandal, J.K., Satapathy, S.C., Kumar Sanyal, M., Sarkar, P.P., Mukhopadhyay, A. (Eds.)
ISBN 978-81-322-2247-7
University of Kalyani, Nadia, West-Bengal, India.
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